PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G053100.1
Common NameB456_008G053100, LOC105763111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 263aa    MW: 28909.1 Da    PI: 6.6947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G053100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11147194455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Gorai.008G053100.1 147 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 194
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-18141210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-10141198No hitNo description
Gene3DG3DSA:4.10.280.107.3E-18143211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPPAMMSDG RYNLAEIWQY PMSESGISRG QFGHGLAQFG DPSREVSGND PGSLEQQQRR  60
GGMRRRRDGE DETAKVVSTS STSSGNAVND GEGKRIKAAG GREQNHESRV EAEPSSGKLV  120
EEKAQPSEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA  180
LVLDEIINYI QSLQRQVEFL SMKLEAVNSG INPAIEVFPR KDYGQQAFDA TGMAFGSQVI  240
REYSGGTSPE WLHIGSAFER TT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436655.10.0PREDICTED: transcription factor BPE-like
SwissprotQ0JXE77e-74BPE_ARATH; Transcription factor BPE
TrEMBLA0A0D2TVN50.0A0A0D2TVN5_G
STRINGVIT_01s0026g01140.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-87BIG PETAL P
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]